Laboratory specimen type reference table (SNOMED CT concepts)

This reference table contains the list of admissible specimen types in microbiology records (see validate_microbiology()). These concepts are from the https://browser.ihtsdotools.org/ and correspond to the descendants of the 123038009 | Specimen (specimen) | concept.

reference_specimen_type

Format

A data frame.

Details

This data frame contains 5 variables:

conceptId

SNOMED CT concept code

moduleId

SNOMED CT module code

fsn_term

SNOMED CT Full Specified Name

pt_term

SNOMED CT Preferred Term

snomed_release_version

SNOMED CT RF2 release date

Examples

data("reference_specimen_type")
head(reference_specimen_type)
#>           conceptId           moduleId
#> 1 16235301000119101 900000000000207008
#> 2 16224371000119105 900000000000207008
#> 3 16224291000119101 900000000000207008
#> 4 16224251000119106 900000000000207008
#> 5 16224171000119108 900000000000207008
#> 6 16224131000119105 900000000000207008
#>                                                                                     fsn_term
#> 1                                     Specimen from sentinel lymph node of breast (specimen)
#> 2                                                       Nasal lavage fluid sample (specimen)
#> 3                                                                  Renal washings (specimen)
#> 4                                                       Papanicolaou smear sample (specimen)
#> 5                                                           Nasotracheal aspirate (specimen)
#> 6 Specimen from mediastinal lymph node obtained by endotracheal aspiration biopsy (specimen)
#>                                                                           pt_term
#> 1                                     Specimen from sentinel lymph node of breast
#> 2                                                       Nasal lavage fluid sample
#> 3                                                                  Renal washings
#> 4                                                       Papanicolaou smear sample
#> 5                                                           Nasotracheal aspirate
#> 6 Specimen from mediastinal lymph node obtained by endotracheal aspiration biopsy
#>   snomed_release_version
#> 1               20200731
#> 2               20200731
#> 3               20200731
#> 4               20200731
#> 5               20200731
#> 6               20200731